PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0076s00050.1
Common NameLR48_Vigan08g104200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 115aa    MW: 13050 Da    PI: 10.1928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0076s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.53.2e-082243224
               AP2  2 gykGVrwdkkrgrWvAeIrdpse 24
                      +y+GVr ++ +gr++AeIrdp +
  Vang0076s00050.1 22 HYRGVRKRP-WGRYAAEIRDPGK 43
                      7********.**********832 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.00772282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-102247IPR001471AP2/ERF domain
PROSITE profilePS5103210.0862247IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-52247IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MVAKDKTVIK NKKPNNAADE VHYRGVRKRP WGRYAAEIRD PGKKSRIQQQ LLVAPVAPVR  60
PVFLLDRAHY LTHQFPFRFE PAPVQSDSDS SSVVDCQPKR ELNLDLNLAP PMDY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-112AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492221.12e-31PREDICTED: ethylene-responsive transcription factor 9-like
TrEMBLA0A0L9V5465e-32A0A0L9V546_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SBC45e-32A0A0S3SBC4_PHAAN; Uncharacterized protein
STRINGGLYMA12G13315.12e-21(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4068522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.18e-14ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]